rs48642587 SNP Detail

Summary

• ID
  rs48642587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145735086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGTGAG TAGAAAACCA
  GTGTCATTTG TCATCAATAA GCATCAATTT TCCTATACAT AACAATAAAC CGGTGAGTAG
  TCATATGTAT GGTGATCTAC ATCTTGAGCT ATCTACACAC AGCAATTGAG AGAGTATTGC
  TATGTCTCAA TCCTGCCTTC TCTCTATCAC AAATAGAGGG ACAGGAAAAC CAAAGCTGCT
  Y
  TGAGTTAGGC TCATAGCTAA CACCAGGTCC TTCTCTGTTA AAGGATTGAA TGCACCTTGT
  CCGGACCAAC TCTTGCGAAA GCCTGTTGGG TCTATAAAAC AAACAACAAC CCCTATCCCC
  TCGAGGGCTA GAGACATGGC TCAGTGGTTG CAGCTCTTTC AGGTGACCTG AGTTCAGTTT
  TTAGCAATTG AAGCAGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61096117	NES16611386	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48642587					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096117	NES16611386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145735086 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	within coordinates
Rr586905	regulatory region 586905	1562 bp distal
Rr586906	regulatory region 586906	within coordinates
Rr586907	regulatory region 586907	1068 bp proximal
Rr586908	regulatory region 586908	1362 bp proximal