rs48642998 SNP Detail

Summary

• ID
  rs48642998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10609683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGA CGCCTCTTGT GGATCCTATG
  Y
  AGCCTCTTAC GAGAGCAGCG CCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63647384	NES17047511	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48642998					SNP	T	T	T	T	T	C	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647384	NES17047511	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10609683 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	within coordinates
Prm3	protamine 3	905 bp upstream
Rr511598	regulatory region 511598	1051 bp distal
Rr511599	regulatory region 511599	912 bp distal
Tssr137053	transcription start site region 137053	371 bp downstream
Tssr137054	transcription start site region 137054	228 bp downstream
Tssr137055	transcription start site region 137055	1 bp downstream
Tssr137056	transcription start site region 137056	5 bp upstream
Tssr139950	transcription start site region 139950	900 bp upstream
Tssr139951	transcription start site region 139951	869 bp upstream
Tssr139952	transcription start site region 139952	336 bp upstream
Tssr139953	transcription start site region 139953	232 bp upstream
Tssr139954	transcription start site region 139954	179 bp upstream
Tssr139955	transcription start site region 139955	80 bp upstream
Tssr139956	transcription start site region 139956	276 bp downstream
Tssr139957	transcription start site region 139957	1314 bp downstream