rs48643161 SNP Detail

Summary

• ID
  rs48643161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:33608433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTCTT CTTTCTCTTC
  TTTCTCTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTC
  TTCAAGACAG GGTTTCTCTT ATAGCCCTGG CTGTCCTGGA ACTCACTTTG TAGACCAGGC
  TAGCCTCAAA CTGAGAAATC CGCCTGCCTC TGCCTCCCAA GTGTTGGGAT TAAAGGTGTG
  Y
  GCCAACCACT GCCCAGCGTG TTCTTCTTCC ACCCTTCAAC ACCCCTTTTT TTCCTCCCTT
  TCAACCCCCC AATGCTAAAT AAGAGAGAAA GGAAGGATGG AGGGAAGAGA GGAAAGGGAA
  GAGATCCTGA ATCTAATTTC TTCCTCAACA ACAACTGCAA ACAAATCACA ACCAACCCCC
  CTGAATGACC GACACCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147961117	ENSMUSSNP2327196	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss325139902	CHEV_16_33788149	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48643161					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:33608433 () rs orientation: forward

Symbol	Name	Function Class
Gm15657	predicted gene 15657	within coordinates
Gm15658	predicted gene 15658	within coordinates
Rr326609	regulatory region 326609	34 bp distal
Tssr140846	transcription start site region 140846	1044 bp upstream
Tssr140847	transcription start site region 140847	931 bp upstream
Tssr140848	transcription start site region 140848	887 bp upstream