rs48643961 SNP Detail

Summary

• ID
  rs48643961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153616808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AGACTAGCTA GGTGCCCGAA
  R
  CCTCTCTCTG GAGATTTGAG TGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60819981	NES16431165	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	G	A	A	A	G
ss145749151	ENSMUSSNP199600	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48643961					SNP	A	A	A	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819981	NES16431165	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153616808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi870	CpG island 870	458 bp distal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	within coordinates
Rr420742	regulatory region 420742	853 bp distal
Rr420743	regulatory region 420743	703 bp distal
Rr420744	regulatory region 420744	1529 bp proximal
Tssr9477	transcription start site region 9477	702 bp downstream
Tssr9478	transcription start site region 9478	522 bp downstream