rs48644465 SNP Detail

Summary

• ID
  rs48644465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128784591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cacatggta catgcctata ctcccagata
  ctcagaatca aaagttcaaa gcctatgtag gctacaaagt gagttcaagt ccatcctgga
  ccatctagtg agacattatc ttatagtaaa gagctaaaAG AAGCCAAggg ttgtagctca
  R
  tggctgagtg accatgcatc aggccctgag ttaagtttcc tgtatacact acagaagaCA
  AGTCTTCCTT AAGCTTATGT CCTGGGTGGT GGGTGACTTC CATAAAGATG CCCCCCCTCT
  TTTGCCCCTG AAAGTAGACT GGGTGGGTGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60795381	NES16468463	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	G		A	A		A
ss319967639	CHEV_1_130753431	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48644465					SNP	G	G	G	G	A	G	A	G	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795381	NES16468463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128784591 () rs orientation: forward

Symbol	Name	Function Class
Rr372000	regulatory region 372000	1317 bp downstream
Rr417836	regulatory region 417836	195 bp proximal