rs48645951 SNP Detail

Summary

• ID
  rs48645951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165952945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGGGTTCT CTGCTCCCGA CTGTGTTGCT CAAGGACCTG
  CCCCGGAGTT TATCTGAATG AAAAAGACTC CTCTGTTTGG TCTACACAAG ACTGCCACTC
  Y
  CTATCCACAC CCTGGGGAAT GTGGTTTGAA TAAGAACTGC TTCTGTAGAT TCACCGTTTG
  AATGCTTGGG TATCCGGGAG TGGTACTAGA GAGGGATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146013137	ENSMUSSNP5201926	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48645951					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165952945 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	212 bp upstream
Rr13830	regulatory region 13830	1945 bp distal
Rr25503	regulatory region 25503	1984 bp distal
Rr28891	regulatory region 28891	855 bp proximal
Rr372394	regulatory region 372394	within coordinates
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9857	transcription start site region 9857	178 bp upstream
Tssr9858	transcription start site region 9858	1613 bp upstream
Tssr14809	transcription start site region 14809	1472 bp downstream
Tssr14810	transcription start site region 14810	1805 bp downstream