rs48645979 SNP Detail

Summary

• ID
  rs48645979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16422920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG CTTCTGAACA AGAAGAGCCG
  Y
  CTCTAAGCTG GTACCCTGGT GAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss61574889	NES17524989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	C	T
ss137182882	ENSMUSSNP3220616	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323915854	CHEV_12_16379725	CHEVERUD	SCREENING_POP	f	SNP							C				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs48645979					SNP	C	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61574889	NES17524989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16422920 () rs orientation: forward

Symbol	Name	Function Class
Gm36372	predicted gene, 36372	within coordinates
Rr262937	regulatory region 262937	1583 bp distal
Rr269311	regulatory region 269311	1467 bp proximal
Rr386910	regulatory region 386910	1507 bp upstream