rs48646611 SNP Detail

Summary

• ID
  rs48646611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135674058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCCGCTAC CCTTCACCCC TGCTCAGGGG AAGTAGGTTC
  CTTTCCTGGG CCATGGCCCA GCGTGTCACT GGATCTCCCC ACTCTCACCC TCGGTCATCT
  Y
  TGGCCTCTGA GCTGCTGGGA AAGGGTGGCT GTCAGCCTGG CCATCGGCTC TGCCGTGGGG
  AAGTGGATGC AATGATGAAG ACTCACCAGA CTTCAGCCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60803846	NES16474134	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48646611					SNP	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803846	NES16474134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135674058 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419262	regulatory region 419262	within coordinates
Rr419263	regulatory region 419263	1339 bp proximal
Tssr222	transcription start site region 222	450 bp upstream