rs48648310 SNP Detail

Summary

• ID
  rs48648310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAAA AAAAAACCTT AAAGAATGAA TGGGTTTAGA
  GACAGTTGGG GTGGGGGAGG GAAAAGAAGA AGGGACAGAC CTCCAGCAAG AAGAGTTGAC
  R
  CAGATCACAG ATCATAGCCT TGGGCAGATT CCCTGCACAC AGCCCATGAG ACTCTGGGAG
  ATGCCCCTGG GGTAAGGACA GGAGAAATAA GAGGGAAGGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60972097	NES16154411	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48648310					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972097	NES16154411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455765 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	89 bp upstream
Cpgi18385	CpG island 18385	1849 bp proximal
Gm5586	predicted gene 5586	1930 bp upstream
Tssr64618	transcription start site region 64618	114 bp upstream
Tssr70767	transcription start site region 70767	1900 bp upstream