rs48648853 SNP Detail

Summary

• ID
  rs48648853
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55516976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATACATA GGCATGCCTA
  TCATATGCAC CCATCCAAGG CACTATACAC TATCTATCTT ATTTTGTTTA CATTTAGATA
  TAGATACAGA CATAGTATAG ATCCAGATTG AGTTTCCTGT AACTAAGTCT GACCTCAAAC
  TGTTATTCCT GCCTCTGCCT CACAAGGGCT GGCATTACAT ACATGTGCTA CCCTGCCCAG
  M
  TTCGAGTGTG TATGCCTGAA GATTCAGGTG CCCTCGTGAC ACAGCATGCC CACATGCATG
  GTCACACAGG TGATGTGATT ACCTCTTTGC TCACCTGGCT ATCAGATGAC AGCCTAGGGG
  CAGCAGTCTC CGCATGCAAA CTGCCTGAGC TAGGGTTGCT AAGCATGCAT AAGCCTGGGA
  CATAGAAGGT AAATGAGTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806370	NES17743863	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48648853					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806370	NES17743863	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55516976 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	569 bp upstream
Rr369713	regulatory region 369713	322 bp upstream
Rr480442	regulatory region 480442	1124 bp distal
Rr480443	regulatory region 480443	558 bp distal
Rr480444	regulatory region 480444	338 bp distal
Rr480445	regulatory region 480445	88 bp proximal
Rr480446	regulatory region 480446	580 bp proximal
Tssr119942	transcription start site region 119942	573 bp upstream
Tssr119943	transcription start site region 119943	604 bp upstream
Tssr119944	transcription start site region 119944	618 bp upstream