rs48649697 SNP Detail

Summary

• ID
  rs48649697
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58736130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGGGTTTC CATGACTGTG AAGAGACACC AGGACCATGG
  CAATGCTTTT AGAGGAAAAC ATTTCATTGA GGCTCATTTA CACTTTTCAG AGGTTTAGTC
  G
  ATTATCATCA TGGTGGAAAG CATGGCGGCA TGCAGGTAGA CATGGTGCTG GAGAAGAAGC
  TGAGCATTTT CCATCTTGCT CCTCAGACAG GAAAAGGAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132214900	ENSMUSSNP519227	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48649697					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58736130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2935	CpG island 2935	1725 bp proximal
Gm12258	predicted gene 12258	1854 bp upstream
Rr246822	regulatory region 246822	1470 bp proximal
Rr402593	regulatory region 402593	1587 bp upstream
Tssr101753	transcription start site region 101753	1849 bp upstream