rs48649750 SNP Detail

Summary

• ID
  rs48649750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166556678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT TAGGGACCAG CATACGGCTG
  R
  GCCATAGTCC CTGGAAAGTG ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148258376	ENSMUSSNP3459744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48649750					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166556678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	131 bp distal
Gm57440	predicted gene, 57440	within coordinates
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	926 bp upstream
Rr397493	regulatory region 397493	685 bp downstream
Rr570355	regulatory region 570355	1823 bp distal
Rr570356	regulatory region 570356	981 bp distal
Rr570357	regulatory region 570357	436 bp distal
Tssr21773	transcription start site region 21773	642 bp downstream
Tssr27709	transcription start site region 27709	1015 bp upstream
Tssr27710	transcription start site region 27710	931 bp upstream