rs48651944 SNP Detail

Summary

• ID
  rs48651944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138763294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG GGTCAGTACC AGGCTAATTT
  W
  ACAAGAGGAA TCTTGCACAT TTAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145582997	ENSMUSSNP56524	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320001369	CHEV_1_140732133	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48651944					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138763294 () rs orientation: forward

Symbol	Name	Function Class
Lhx9	LIM homeobox protein 9	Intron
Rr419772	regulatory region 419772	within coordinates
Rr419773	regulatory region 419773	11 bp distal