rs48652144 SNP Detail

Summary

• ID
  rs48652144
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119462219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATACACACA CACACACACA CACACACACA CACACACACA
  CAAAGATCAA GGGCCGGGAA GCTGATATGA TCTACTTCTC AGTACCTGGA GGACAGCCAG
  K
  AGCAGATGTG AAGACATGGA GTGATTGCAC CTCTGAGGCT CAAGGCAAGA GATGTTTGAA
  AACCGAGCCC AGGACCCACC CATGAGGGCA AGCGAATCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60832049	NES16023357	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	T	G	G	T	G		G	T	T	G		G
ss149169739	ENSMUSSNP3195824	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321664868	CHEV_5_119774163	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48652144					SNP	G	G	G	G	T	T	G	G	T	G	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60832049	NES16023357	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119462219 () rs orientation: forward

Symbol	Name	Function Class
Gm42016	predicted gene, 42016	1798 bp upstream
Gm57254	predicted gene, 57254	within coordinates
Gm73317	predicted gene, 73317	within coordinates
Tssr48449	transcription start site region 48449	1855 bp upstream