rs48652275 SNP Detail

Summary

• ID
  rs48652275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGTCC CCTTGCCCTT
  CTGACGAGTT GTGACTCAGC ATAAAGGCCC TGGTCAGAAC AATGAATGCT CTTGGTCTTC
  TCTGTCAGAG CCATGAGCCA AGGAACCTTC TATTGTTTGT CAGTTATCCA GACTGTCACT
  CTGTTACCCA AACTGTGAAG TTCACCAGAT AGAACATCAG AGAGGGTGGG AAGCCCTGGT
  Y
  GTCCTCATGG CTAACCCCCA CCTGAAAACC TCAGCACCCC TTCATTTAGG GTTTTCTTCT
  TTTCTTTTCT TTTCTTTTCT TTTCTTTTCC TTTTCTTTTC TCTTCTCTTC TTTTCTTTCT
  TTCTTTTTTT TTTTTGAGGG ATTTCATCAT GTAGCCATGA AAACCTCAAA GTTCTAGGAA
  ACTGCAAACT ATTTGGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460820	NES16446484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48652275					SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460820	NES16446484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590659 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1488 bp distal
Rr516711	regulatory region 516711	within coordinates
Rr516712	regulatory region 516712	1044 bp proximal
Tssr138713	transcription start site region 138713	316 bp upstream
Tssr141324	transcription start site region 141324	1587 bp upstream
Tssr141325	transcription start site region 141325	1558 bp upstream
Tssr141326	transcription start site region 141326	1517 bp upstream
Tssr141327	transcription start site region 141327	1494 bp upstream
Tssr141328	transcription start site region 141328	474 bp upstream
Tssr141329	transcription start site region 141329	494 bp downstream
Tssr141330	transcription start site region 141330	509 bp downstream
Tssr141331	transcription start site region 141331	522 bp downstream
Tssr141332	transcription start site region 141332	550 bp downstream
Tssr141333	transcription start site region 141333	1385 bp downstream
Tssr141334	transcription start site region 141334	1540 bp downstream