rs48652658 SNP Detail

Summary

• ID
  rs48652658
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44213246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC CTGTTCAGAA CCCTGATACT
  C
  TTTCCTCGTG AATTAATAGT TATTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148061277	ENSMUSSNP5810861	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325162674	CHEV_16_44392996	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48652658					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44213246 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	1913 bp upstream
Rr516303	regulatory region 516303	336 bp distal
Rr516304	regulatory region 516304	1426 bp proximal
Rr516305	regulatory region 516305	1927 bp proximal
Tssr138551	transcription start site region 138551	1888 bp upstream
Tssr138552	transcription start site region 138552	1922 bp upstream