rs48653515 SNP Detail

Summary

• ID
  rs48653515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46321953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAGTTTC CAGCCCCGAC
  ATCAGGCAGT TCACAGCCAG CTGTAACTCA TGCACCAGAG AATCTGACAC CCTCTTCTGG
  CCTCTCTTGA AACCTTGGCT TGCACTCGTG CACGCACGCA CAAACACACA CAGAGCAATT
  TGGGATTCAC TATATTGCTC AGACTGGCCT TGAGTGACCA GGCAAGACTG CTTTAGTCTC
  Y
  CAAGTAGCTG AAACCACAGG AATGTGCTAG CACACGCAGC GTCACACGCA CATTTTTAGA
  AGTGTGAACA GAGAGAGAGG GGGAAGGGAA GGAGCGGGGA GAGGAGAACC TCATGAGAAA
  TGTCATAGTG AATACTTTGA TGAGGAAATA GTAGCTAACT AGCCTGGAAC CAAGGGAGAG
  AGCCAAATAT TGAAAATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149177916	ENSMUSSNP4084496	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48653515					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46321953 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	within coordinates
Tssr72530	transcription start site region 72530	218 bp upstream
Tssr72531	transcription start site region 72531	131 bp upstream
Tssr72532	transcription start site region 72532	23 bp upstream
Tssr72533	transcription start site region 72533	5 bp upstream
Tssr72534	transcription start site region 72534	within coordinates
Tssr72535	transcription start site region 72535	25 bp downstream