rs48654114 SNP Detail

Summary

• ID
  rs48654114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76042203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTACCA CGCCCGGCGA
  GGTGTGCTGT TCTTTACGCC ATCTGCCTGG AGCCTACAAA TGCAGCTGAC TGTGGATAAG
  CTTCCATTGC TGTGGGATGG CCAGCCAGGG TCCCACAAGG CACCGAGAGA TCAAGGTCAT
  GCTGTCCATG CTGAGCCTGA GGAGGGCGAG CCCTCATGAA CTCGCCTGCC AAGCGGGGTT
  R
  GAGTGGCACC TGTGCTCAGT CCTCCAAGGG TTGGGCTGGG CTGGTGCTCA GCAAACATGG
  GAAGCTGCCT CCTATCCACA GTGGACATGG GACATAGTTA GCCTCAGAGG GGGACAGAGG
  GCTCGGTGGC ACACCAGCAG ACCTGATCCA TGGGCACTTG CCAGGGCACA GTACATCTTT
  CTGTAACACT GGATATCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63566432	NES16968247	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48654114					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63566432	NES16968247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76042203 () rs orientation: forward

Symbol	Name	Function Class
Gm62598	predicted gene, 62598	1923 bp upstream
Rr390932	regulatory region 390932	within coordinates
Rr504649	regulatory region 504649	1934 bp distal
Rr504650	regulatory region 504650	1558 bp distal
Rr504651	regulatory region 504651	1337 bp distal
Rr504652	regulatory region 504652	371 bp proximal