rs48654617 SNP Detail

Summary

• ID
  rs48654617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41581565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAATAACCCT CAAAACAGAA TGGAAAATGC TTATGCAAAA
  TGACACAAGC CTTCCCCATT CTCAGCAGGC TTCTCCATGT CAATACGTTT GGTACAACAG
  Y
  TTTCCCAACT CTACAGTTCT GTCAGTGAAC TATGAATATG TTTAAATATT TTCCAGATTC
  ATCATGGAAG CTGCTTTTCT TCTCTGCACT GTAATCACAC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135042570	ENSMUSSNP7186266	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48654617					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41581565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66500	predicted gene, 66500			within coordinates
Sclt1	sodium channel and clathrin linker 1			mRNA-UTR
				Noncoding-Transcript-Variant