rs48654619 SNP Detail

Summary

• ID
  rs48654619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80565197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCAATT AAAATGTATA
  ATTAAAGTAT TTAATTAAAC CACCACACAG ATATTGATGT GTAGCCTGAC ACTGAGGCTT
  TGCACTGGCA GTTATGGCTG CCTTGGAATT CATACATAAA GTTTTATTCT GAGAATTCCA
  AGTGTTGACA GGAAATGCTA AAAATGAGAT AGGGGAGTGC TAGGAAAATG CAGAAAACAA
  R
  CTGCACCCCA TGCATGGCTG TTGGTGAGCC ACAGGGCAGC TTCTGAATGG CCCTGACTGG
  AGTTACTCCT CAGCAAACTA CACAGACCTG TGGCTTGAAT TAGCATGGGC AAGTGCCAGG
  CTAGAGATTT CCCTTCAAGA GGTCTTCAGG TTCCAGCTGT TAAACTATCA GGAAGCCTCA
  GACTACTTGA AAGACACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61432481	NES16813842	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A	G	A	A	A		G		G	G		A
ss136688855	ENSMUSSNP2626049	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A					G
ss323024897	CHEV_9_80576751	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs48654619					SNP	A	A	A	G	A	A	A	G	A	A	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61432481	NES16813842	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80565197 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	896 bp distal
Rr683773	regulatory region 683773	within coordinates
Tssr86335	transcription start site region 86335	1231 bp downstream