rs48654720 SNP Detail

Summary

• ID
  rs48654720
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78662295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT CTGTGGAGAA CAAGGACGTG
  C
  ATGACTCAGG ACCACAGGCC TGGCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148188034	ENSMUSSNP2824844	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325025484	CHEV_15_78608525	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48654720					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78662295 () rs orientation: forward

Symbol	Name	Function Class
Card10	caspase recruitment domain family, member 10	within coordinates
Gm62343	predicted gene, 62343	1471 bp upstream
Rr304149	regulatory region 304149	within coordinates
Rr314476	regulatory region 314476	within coordinates
Tssr131989	transcription start site region 131989	1460 bp upstream