rs48655255 SNP Detail

Summary

• ID
  rs48655255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:24336594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACCCTG AAACTTGTGG
  GAGGGCTTCT AATGCTGTTC TGGATGCACA CTAGAATCAT CTCACCCCGG GACAGAGGCC
  ACTGGGAAAG ACGTTGTCTT TGTGGGGAGA AGGCTTTAAC AAAGAACCCT GGGTTCTACC
  CGGTCCTCAC CCGCAGGAGC GCAAGCCCTG GAGTGCTACA GCTGCGTGCA GAAGGCGGAC
  R
  ATGGATGCTC TCCGCACAGG ATGAAGACAG TCAAATGTGG TCCCGGGGTG GACGTCTGTA
  CCGAGGCCGT GGGAGCGGTA GAGACCAGTA AGTGCTACCC ACCCGGTGGT CCCTGACTAC
  CCCTTCCCAA CTCCTACAGT GTAACTCCGC CTCCTTAGGG ACCTTTCAGA TTCTGGCCAC
  GCCTTTCCCT TTCAGCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982648	NES16151016	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48655255					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982648	NES16151016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24336594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	within coordinates
Cpgi18555	CpG island 18555	1168 bp proximal
Gm26550	predicted gene, 26550	within coordinates
Lypd3	Ly6/Plaur domain containing 3	Coding-NonSynonymous
Rr643529	regulatory region 643529	609 bp distal
Rr643530	regulatory region 643530	737 bp proximal
Tssr2135	transcription start site region 2135	555 bp downstream
Tssr65017	transcription start site region 65017	649 bp downstream
Tssr65018	transcription start site region 65018	605 bp downstream
Tssr65019	transcription start site region 65019	580 bp downstream
Tssr65020	transcription start site region 65020	1607 bp upstream
Tssr65021	transcription start site region 65021	1615 bp upstream