rs48655876 SNP Detail

Summary

• ID
  rs48655876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78754895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTTTC TTCCCCCCCC
  CTTTTCTTAA TTTGTCAAAG CTCCTCCCTC TGGATTCTTA GCCCTTGAAA GAAAGAAAAT
  AAAACACAAT ACAACTTTAA AGTTACAATT TTCAACAACT TAAAATGTTT ATACAAGTGA
  TCTCAAAATT GAGAGTAGGC TATATTTTCC CAACTATGTC AATAAAACCT TAGACTCAAA
  W
  TTTTTTTTCC TTGAGAGTTT TCTGTTTGGA CAGCGATTGC TGTGACTTTT GGGAGCATGC
  ACTTGAAAAT GTAAATTAAA ATGTTTTTGC CACTGTAGTG AGGATCAATG ATTCCAGTAG
  TCTTGGACTT TATACACACA CACACACACA CACACACACA CACACACACA CACACACACA
  GACTATATGC ACAAATGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss61426021	NES16807123	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	A	A	A	A	A
ss136670535	ENSMUSSNP1529536	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs48655876					SNP	T	T	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426021	NES16807123	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78754895 () rs orientation: forward

Symbol	Name	Function Class
Rr210878	regulatory region 210878	306 bp proximal