rs48656072 SNP Detail

Summary

• ID
  rs48656072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148783683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCCCA CCTCCATACA
  ACTTGCATAA TAGATGGGAA TATTAAAAAT GATTTTTATA TACGTATCTG TCGTATAGAC
  ATTTATAGAA GCAGAATTTT GGATATGTCA CAACCATACA CATTATCTGT TAATATATCA
  TGATAAAAAT AATGTTTAGA AAATGAGCGT CTCAGTGAAC ATGAAGGCCT GGCGCTACAT
  R
  TGATTTGAAT TGTGTTGCCA ACGGACTTAG GGCTGAGATT GCAATGTACT CAAACCTCTT
  AATTCCTGTA GGCAAACTTG CAATTTTAAA AGTTATTTAA TCTCAAATAT CAAAAGTGTC
  AACCGATACT CTATGAAAGT ACGTATAGTC TTTGCTTCAA GCTGCCTTAT ATCCATCTCA
  AAATCGACAG ATAAAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss61098097	NES16608692	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A		A	G		G
ss321017240	CHEV_3_148741011	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs48656072					SNP	G	G	G	G	G	G	G	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098097	NES16608692	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148783683 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	1820 bp distal
Rr587253	regulatory region 587253	514 bp distal
Rr587254	regulatory region 587254	908 bp proximal
Tssr36091	transcription start site region 36091	947 bp upstream
Tssr36092	transcription start site region 36092	919 bp upstream
Tssr36093	transcription start site region 36093	887 bp upstream
Tssr36094	transcription start site region 36094	854 bp upstream
Tssr36095	transcription start site region 36095	781 bp upstream
Tssr36096	transcription start site region 36096	684 bp upstream