rs48656157 SNP Detail

Summary

• ID
  rs48656157
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172344820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG GGAATTGAAC TCAGACCTCC
  K
  GAAGAACAGT CAGTGTTCTT AGCCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011730	PARCsnp_1.19943	PARC_SEQ	INBRED	f	SNP			G	T
ss120014624	PARCsnp_1.09993	PARC_SEQ	INBRED	f	SNP			G	T
ss146194138	ENSMUSSNP3932347	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320125826	CHEV_1_174447384	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48656157					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172344820 () rs orientation: forward

Symbol	Name	Function Class
Gm70635	predicted gene, 70635	within coordinates
Rr372460	regulatory region 372460	827 bp upstream
Rr423606	regulatory region 423606	1211 bp distal
Rr423607	regulatory region 423607	952 bp proximal