rs48656447 SNP Detail

Summary

• ID
  rs48656447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40505232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCGCTCC TGGGTGGAGC
  AGCCTGTAGC GCCCTAGGCT TCAGTCCCCC AGCTCTTAGG AGCTCCTCCC ATCCCAGGCG
  GTGCCCACCT GAAACCTTAG CTTTTCCTTT CTTCTTCTTA TTCTGATCTT CCTCTCCCAG
  CCCTCCACCT CCCTACCCCC GGTCGTTGGC TTCTTCTTCT TCTTCTTCTT TTTTTTTTTT
  Y
  CTGCGATAAT TCTCTGGTTT GCCAAATCTC TCTAATCAAG CTCCTGGCCT TGCCTCACTG
  TGCCTTCCCT CCCTGTCTGT TGTCACAGTT GTGGACCAGG AGGTATTTAG TCTCACTTGC
  TGGGCGAATC CTGCTTCACA GATGTAAGTG AAGGAGAAGC CACTGCCCAG GCCTGTGTGT
  GGGCCACCTC TCTGAAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721677	NES16361074	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48656447					SNP	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721677	NES16361074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40505232 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	657 bp downstream
Il18r1	interleukin 18 receptor 1	within coordinates
Rr16188	regulatory region 16188	232 bp distal
Rr29358	regulatory region 29358	within coordinates
Rr33590	regulatory region 33590	969 bp proximal
Rr33591	regulatory region 33591	1969 bp proximal
Rr371160	regulatory region 371160	within coordinates
Tssr6465	transcription start site region 6465	374 bp downstream
Tssr6466	transcription start site region 6466	343 bp downstream
Tssr6467	transcription start site region 6467	97 bp downstream
Tssr6468	transcription start site region 6468	66 bp downstream
Tssr6469	transcription start site region 6469	within coordinates
Tssr6470	transcription start site region 6470	16 bp upstream
Tssr6471	transcription start site region 6471	108 bp upstream
Tssr6472	transcription start site region 6472	222 bp upstream