rs48656588 SNP Detail

Summary

• ID
  rs48656588
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81329648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGGACAG GCACGGTATA
  TCCGGCACAG AACCATGGCA GGCCAAGCTG ACCCTTAGGG GTCTGAACTG CATGGGCCAG
  AGGTGAATCG ATACAGCAGG ATGATCCCTT CAAGAACTGC AGTCCCCTGG GCCCCACTTA
  CAGCCAGACT TGGGGCACTT TGTAAATGCT CAGCTCTCAC AAGAATGATG GCAGGCAGTA
  M
  CCCTAGATGC ACATGGCCAG GAGGGGGCAG TGAGTGACTG CTCACTGTGG AGGGGACTCG
  AGTCCTGTGG AGTCTCCAGG GTGGTCACCT GAATGCTGAC ACCCAAACCA CCATGAAACC
  CTCCTACCCC AGGACCCAAG TGTCAAAGGT ACGTGGTGCT GGGTCTAGAA CAGTTCACTT
  GGGGTCTCCC CAGACACATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292437	NES16908857	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48656588					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292437	NES16908857	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81329648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	1686 bp proximal
Ncln	nicalin	within coordinates
Rr435684	regulatory region 435684	10 bp proximal
Rr435685	regulatory region 435685	13 bp proximal