rs48657553 SNP Detail

Summary

• ID
  rs48657553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38605074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGATTAG GGAAACAGTG
  AGAAACGGGA CAAGAAAGAT TCTGAATTAT GTCTTCCACG AGGCAGAACA TGCAGAAAGG
  CCATGGTGTG GACGAATGGC AGTCAGTGCC GGCCGGGATC CCAGCTTGGG CATTGGGAAT
  CAGGCTTCTT CGACTCAGAA TTCCTGCTGT GACCTGTCAG CCATTCATTC CTAGATACAT
  Y
  TCTTAGCGTT TAGTGCCTTT CTCTTTTAAT TTAGAAACGA CAAGCAAGGC TTCCCGATAC
  TGCATGGGTA TTAATAGTGT GTGTATTGGC ACGACGAGCA CACAGCGAGG GGTCGAAGCA
  TGTCAGTTGC TGGAGTGTCA TTTTTGCTCC ATGCATTGGG GACTATACTC ACAAAGTCGC
  GTTGTGTTGC TGCTGTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss147999320	ENSMUSSNP4774359	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48657553					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38605074 () rs orientation: forward

Symbol	Name	Function Class
Tssr138414	transcription start site region 138414	469 bp downstream
Tssr141114	transcription start site region 141114	1187 bp upstream
Tssr141115	transcription start site region 141115	1099 bp upstream
Tssr141116	transcription start site region 141116	976 bp upstream
Tssr141117	transcription start site region 141117	846 bp upstream
Tssr141118	transcription start site region 141118	429 bp upstream
Upk1b	uroplakin 1B	within coordinates