rs48657906 SNP Detail

Summary

• ID
  rs48657906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21297066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAACAAA ACTCAGAAAT
  GCCAGAAGCC TTCCCCCAAG GGTTGAAGTC TCTCGCTCTC AAAGGAGACT TGGTCAGGTC
  AGGGGCAGGT TGATTAATAG GATCTGAGTT AAATGGCATG GAACCTGTAA GCCTGGCTGT
  GTGCAGTCTG ACTAAGTGAG CTCTCGTGGT ACACATCATT GAGGCTAGCT CAGGGAGAAC
  R
  CGAGATAGCA GACAAGAGTG GCACACATTT TTTTTTACTT ACCAGATGTA GCACCACTTC
  TCCCCAACAG GTGGCGCTGG TTCTCTGTAA CATTTTGTTC TCGCCCCTCC TCTCTCTTCC
  CCTCCCCTTT CCTCCCCTGC CTCTCTTCTT GTGTCATCTC TTCTCCCTTC CCTTTACTCC
  CTCTCTTGCT TTCTTCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52168171	NES15221842	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48657906					SNP	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52168171	NES15221842	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21297066 () rs orientation: forward

Symbol	Name	Function Class
1700021A07Rik	RIKEN cDNA 1700021A07 gene	within coordinates
Cpgi1360	CpG island 1360	1625 bp distal
Rr214085	regulatory region 214085	within coordinates
Rr224569	regulatory region 224569	1665 bp distal
Rr368955	regulatory region 368955	1775 bp downstream
Tssr92636	transcription start site region 92636	1707 bp downstream
Tssr92637	transcription start site region 92637	1686 bp downstream