rs48658169 SNP Detail

Summary

• ID
  rs48658169
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147500702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTTATC ACGAAACCAA
  CTTAAGATAG TAAAGGCTAA AGGTCCTTGT TCCTTTTGTG GAATCCTTAC CTGAGTTCTA
  TATTAACATC TTTTCCACCC CACACTATCC TTTCTTCATG ACATCTTTAA TCATTACTGT
  TGCTTGTGTG TACATTATAT ACATGGAAGT ATAAGTGTAT CCTGCTGAGT CCATTTCGTA
  W
  GTTATATGTA CATATGGTTA GTGGTGACCA CTTGGGATTG GATAACCCAT CAAGGGAGCT
  TGTCCTTGGG GAAGAATGAG TCTATCTTTC TTGGCAGCCA TTGCATGACA GCAACTTTTT
  AAATTGTGTG TATATGTATT TGTGTGTATG TCTGTGTATG TGTGGCAGGA AGGGAGGGCA
  TGTACACAGG AATGCTAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136053866	ENSMUSSNP4429228	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321013476	CHEV_3_147458030	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48658169					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147500702 () rs orientation: forward

Symbol	Name	Function Class
Rr587161	regulatory region 587161	1540 bp proximal