rs48658660 SNP Detail

Summary

• ID
  rs48658660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTAGCTT TTCCTTCGGG AAAAGTATTT GGAAAGGAAG
  ACAAAAAGCC AGCATGACTG GAAGTTCTGA ACAAGTGTCA GGGGGGAAAG AAAGAAAGAA
  R
  GAAACGCAAC ACATTGGGAA AGCCACTTGG TTGCCAGACA CAGTAGACAT CCCTCCCTGG
  GTTGACACCA CAGCAGATAA ATGTTATCCC CGGAGTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133506691	ENSMUSSNP6131065	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48658660					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639082 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1187 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	388 bp distal
Rr399817	regulatory region 399817	239 bp downstream
Rr636156	regulatory region 636156	1237 bp distal
Rr636157	regulatory region 636157	1376 bp distal
Rr636158	regulatory region 636158	697 bp distal
Rr636159	regulatory region 636159	134 bp distal
Rr636160	regulatory region 636160	1459 bp proximal
Tssr58072	transcription start site region 58072	1675 bp downstream
Tssr58073	transcription start site region 58073	1624 bp downstream
Tssr58074	transcription start site region 58074	1587 bp downstream
Tssr58075	transcription start site region 58075	1439 bp downstream
Tssr58076	transcription start site region 58076	1334 bp downstream
Tssr58077	transcription start site region 58077	1255 bp downstream
Tssr58078	transcription start site region 58078	344 bp downstream
Tssr58079	transcription start site region 58079	125 bp downstream
Tssr58080	transcription start site region 58080	218 bp upstream
Tssr58081	transcription start site region 58081	649 bp upstream
Tssr58082	transcription start site region 58082	998 bp upstream