rs48658830 SNP Detail

Summary

• ID
  rs48658830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:94885650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTTTGG TTGGCTTAGT
  TCTTTTTAGG ACAGAAGCTG ACAAAATCAA AACAACAACA ACAACAATGA AAATAAAGAA
  AAGAAAAAGA AAAGAAAAGG AACCCCCCAA ATATTCACAA CAATAGCAAG TAAACAATAG
  AATTAGATAG CTCTGCTTTT GTGTGTTTAA TCAGCAGAGG GATGGTGAAA TGGCTGACCA
  Y
  GTAAAGCAAT TGCTAACAAG TCTGAAGACC TGAGTTTAAT CCTCAGGACC ACATGGAATG
  AAAGTATGGA TGGCTCTGTC TTAGGGTTTT ACTACTGTGA ACAGACACCA TGACCAAGGC
  AACTCTTATA AGGACAACAT TTAATTGGGG CTGGCTTACA GGTTCAGAGG TTCAGTCCAT
  TATCATCAAG GCGGGAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63596438	NES17038047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48658830					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63596438	NES17038047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:94885650 () rs orientation: forward

Symbol	Name	Function Class
Gm23129	predicted gene, 23129	631 bp upstream
Gm52203	predicted gene, 52203	832 bp downstream
Rr391133	regulatory region 391133	798 bp downstream
Tmem117	transmembrane protein 117	within coordinates