rs48659600 SNP Detail

Summary

• ID
  rs48659600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127818470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGGATAA CAAACTCATT
  GTTGAGGCCA GTGACAATTA TGTGGACCTA AAACATCTGC CCTGCTTTTA TTCTGTGGAG
  AGTCATCCAA ATGTGTTTTC TATGCCAGAT CTGATGGAGA CTCACAAGAC ACAGACAGCA
  TCATTCTTTG AGAAAACTGT AAGAAATAGA ACATTTGATT TTTAAATGTT CTGTATATCT
  R
  TAATTTACAG ATATGATATC TGTAAATCAA TAAGATCATA GGTGCATGGC AGTTTGCACT
  CAGGATCAAG CAGGATCAAG CTGACAGAGG TATCTGAAGT GGCAATTTCT GGTTTCTTTG
  TAACTCAGTT GTAGCCTGTG ATTTTTTCTG GCCGCTGTCT TGTTCTCGAG AAGGCAGTGA
  TGCTTTGCTG AGAGCAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145887640	ENSMUSSNP2355994	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48659600					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127818470 () rs orientation: forward

Symbol	Name	Function Class
Gm44850	predicted gene 44850	within coordinates
Itgad	integrin, alpha D	within coordinates
Tssr75086	transcription start site region 75086	1570 bp downstream
Tssr75087	transcription start site region 75087	1592 bp downstream