rs48659613 SNP Detail

Summary

• ID
  rs48659613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAAAAACATT AGTGTGGTGA ATTTCCAGAA GACTACGGTA
  GCCCTTCAGA TTTTGTCTTG AAAAGACTGA TCCTAGATTA GCAGACAATG GGGAGTTGTA
  R
  AAGTACACTT ATTGTACTAA CAGCTAAGAC AGAAAATGTA CTAGGAGATT CTGGTTTAGA
  CACTATTGTT TTACTCTTGT TCTGTGAACA CATCTCTTAT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145954955	ENSMUSSNP1469168	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48659613					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642392 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	108 bp downstream
Cpgi13998	CpG island 13998	1433 bp proximal
Fam110b	family with sequence similarity 110, member B	1617 bp upstream
Rr588322	regulatory region 588322	1239 bp proximal
Rr588323	regulatory region 588323	1740 bp proximal
Rr588324	regulatory region 588324	1946 bp proximal
Tssr36378	transcription start site region 36378	1692 bp upstream
Tssr36379	transcription start site region 36379	1741 bp upstream
Tssr36380	transcription start site region 36380	1824 bp upstream
Tssr36381	transcription start site region 36381	1876 bp upstream