rs48659890 SNP Detail

Summary

• ID
  rs48659890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21634715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTACTTG GGTCAGAAAT
  CTATGTGCCC ATTCCTAGAC AGGAAAGCAA ACTTGCTGCA AGAAGTGTAG GGGTCGGGGG
  TGGGAGGGGG CTTCGCATAC TTCTGTTTTG CTTTGGAGGT GGAAAGGAAA GCGTCAGAAG
  GCGACCCAGG GTGTGGAAGG GCGTGGGTCG TCCCTTGAAC ACTCAAACAG CAACGCGGGC
  R
  GCTAAGTGTC CGGGAAGCGG TGAAATTCTG TGGGAGGAAT TTGAGGAACT TCCCACTGCT
  GCGGGAGCTT CAGGGGTTAA AAGAGACGAT GTCACATCGG CCGTTCCAAG CTCCTCCCCG
  CTCAGTGAGG TGAAGATTTT TGAAAATCAC CCCATTGCAG ACTCCTCCCC CGCCTGGAAA
  CCTCGCCCCT AGTACTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136225842	ENSMUSSNP2962404	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48659890					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21634715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21450	CpG island 21450	within coordinates
Gm26511	predicted gene, 26511	5 bp upstream
Ldlr	low density lipoprotein receptor	157 bp upstream
Rr206061	regulatory region 206061	within coordinates
Rr401274	regulatory region 401274	within coordinates
Rr401275	regulatory region 401275	774 bp upstream
Tssr84044	transcription start site region 84044	185 bp upstream
Tssr84045	transcription start site region 84045	205 bp upstream