rs48660344 SNP Detail

Summary

• ID
  rs48660344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119464275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAGATT CCCATCATGC
  TGGGAAGCTG TAGCAAGGGG TACAGCTCAG GGAAGGACAG GATGTTGCCA GGATCTGGGG
  CAGGGCCAAG GGCAAAGGGC ACAGAAGGAA CGGATGTTGG AAAGGGAACG CGAGGCCCTC
  CGGATTGAAG GTGAGAAGGG TTTGGAGAGG TCCGAGGCCA GGAGGGAAGG CATCTGTGGG
  Y
  GTTTGGGCTC GCCCGTCCCA GAAGGGCCAT GGGTTTTGTG TCGGAAGAGT CCTAAGGGAA
  GCTGTGGTGT TGGCGGGTGG TCTACTGGGA AGGACCCTGG GTTAATGCCT CTGTGCATTC
  CCTCATGTCT GTCAGTGACT CTCCCAGCTC AGGGGACCCA CACTGACTGT CCCTGAAGGG
  CACCCCAGGG TGGCTGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60832040	NES16023331	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48660344					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60832040	NES16023331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119464275 () rs orientation: forward

Symbol	Name	Function Class
Gm42016	predicted gene, 42016	within coordinates
Gm57254	predicted gene, 57254	714 bp downstream
Gm73317	predicted gene, 73317	within coordinates
Tssr48449	transcription start site region 48449	169 bp downstream