rs48660558 SNP Detail

Summary

• ID
  rs48660558
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83403015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGAAAA ATGTTCTGGC
  AGAATTCTTT CTCTCTTAGC ATTGAGTTTA AATATTAAAT ATTCATGCTT ACTCTATAAC
  TCCAAATTCA TTCTAAAATA ATTCTTTTCA AATCTTATAG GTATTGTTTG TTTTCTACTC
  TTTTAATATT TAATAAAAAA TACCAACTGT GTAGCTATGT ATGTTCCCAC AGCATTGTGA
  W
  CCTTGTGGGT TAGCCCAACA GATATTACTG ATGTTTTGCC ATTATTCCTT TTATGAAGCC
  TGCCATCCTT GCCACACCAG AGTAACTATC ATGCAGGCAG GCATCACATC GACACAAGCA
  TATTTTCTCT ATACACTCGC CATTCAGCAG AGGGTAGCTT CATGGTTTAT AGAATTTTCA
  ATTGGTAAAA GTAATTGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss144833247	ENSMUSSNP2133532	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48660558					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83403015 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1302 bp downstream
Gm69621	predicted gene, 69621	966 bp downstream