rs48660771 SNP Detail

Summary

• ID
  rs48660771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTCTGTGT GAGTTTGTTC TTCTTGTTCA GCACAAACAC
  TCCCTTGTCC ACAGCCACTA GCCCCACTCG GGCCCCCTGG TTTCCTTCAA TCCTGAGTGT
  Y
  GTTTGTTGCC CAGGTGCGAG ATGGTTATCT CTTGGGTCAC CCTTCACCAC CAGCTATAGA
  GAGGATGGAG AAGTAAGACA GGGAAGGGTT AATCCCAGAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812211	NES17355753	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48660771					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812211	NES17355753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529298 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	788 bp downstream
Tssr145377	transcription start site region 145377	67 bp downstream
Tssr145378	transcription start site region 145378	814 bp upstream
Tssr145379	transcription start site region 145379	895 bp upstream
Tssr145380	transcription start site region 145380	924 bp upstream
Tssr145381	transcription start site region 145381	990 bp upstream
Tssr145382	transcription start site region 145382	1520 bp upstream
Tssr145383	transcription start site region 145383	1636 bp upstream
Tssr145384	transcription start site region 145384	1769 bp upstream
Tssr148935	transcription start site region 148935	1246 bp upstream
Tssr148936	transcription start site region 148936	1225 bp upstream
Tssr148937	transcription start site region 148937	1204 bp upstream
Tssr148938	transcription start site region 148938	898 bp upstream
Tssr148939	transcription start site region 148939	369 bp upstream
Tssr148940	transcription start site region 148940	25 bp upstream
Tssr148941	transcription start site region 148941	32 bp downstream
Tssr148942	transcription start site region 148942	533 bp downstream
Tssr148943	transcription start site region 148943	573 bp downstream
Tssr148944	transcription start site region 148944	593 bp downstream
Tssr148945	transcription start site region 148945	621 bp downstream
Tssr148946	transcription start site region 148946	646 bp downstream
Tssr148947	transcription start site region 148947	885 bp downstream
Tssr148948	transcription start site region 148948	937 bp downstream
Tssr148949	transcription start site region 148949	992 bp downstream
Tssr148950	transcription start site region 148950	1557 bp downstream
Tssr148951	transcription start site region 148951	1598 bp downstream
Tssr148952	transcription start site region 148952	1639 bp downstream
Tssr148953	transcription start site region 148953	1823 bp downstream
Tssr148954	transcription start site region 148954	1874 bp downstream