rs48660957 SNP Detail

Summary

• ID
  rs48660957
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:59324814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGATTT TGAAATGATC
  GCTGTACAGT TGTTAGCTGA GGCCATCTTA AAGTTAAGGA GGCTAATGGA GAGCAGTGAG
  AAGAATTCTG GTAGCGGGCC AAGGACAGAG CCCCACGGCC ACTAACCTAC ACACCATTAG
  CAGCGGCATC TATAAACAAG CAACCAGAGA AATTGGTAGA TGGAAATGAT CAGAACATGG
  C
  AGAAGCAAGG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAATGCAGC TTGTGTGGGC
  TTTTGAAACC TCAAAGCCCA CCCCTAGTGA CACACTTCCT CCAACAAGGC CACACCTCAT
  AATCCTTTTA ATATTTTGAA ATTGTGCTAT TCCCTGGTGG CTACACATTC AAATATATGA
  GCCTATGGGG AGCATTATTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss149144176	ENSMUSSNP6374039	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48660957					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59324814 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk15	cyclin dependent kinase 15			Intron
				Noncoding-Transcript-Variant
Rr411589	regulatory region 411589			982 bp proximal