rs48662218 SNP Detail

Summary

• ID
  rs48662218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30913331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT GCTGGAGAGG CAGAGGCATT
  Y
  AGATCTTCAA GAGTTCTAGG CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148848282	ENSMUSSNP2177813	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss319676650	CHEV_1_30931095	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48662218					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30913331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi99	CpG island 99	within coordinates
Gm7256	predicted gene 7256	775 bp downstream
Gm70275	predicted gene, 70275	682 bp upstream
Phf3	PHD finger protein 3	342 bp upstream
Rr371054	regulatory region 371054	within coordinates
Rr408756	regulatory region 408756	680 bp distal
Rr408757	regulatory region 408757	179 bp distal
Rr408758	regulatory region 408758	259 bp proximal
Rr408759	regulatory region 408759	760 bp proximal
Tssr6135	transcription start site region 6135	237 bp downstream
Tssr6136	transcription start site region 6136	758 bp upstream
Tssr11167	transcription start site region 11167	593 bp upstream
Tssr11168	transcription start site region 11168	325 bp upstream
Tssr11169	transcription start site region 11169	1661 bp downstream