rs48662262 SNP Detail

Summary

• ID
  rs48662262
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78355217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGATGCA CTCTTCTGAC
  TTTTGTGGGA ATAGGCTAGA TCGAGGCGCG CGCGCACACC CACACACCCA TACACCACAT
  GCACAGGCAA AACAATCATA CACATAAAAT AAATGTCAAA AAAATGTTTA AGCTGTATAT
  AAATAATGGA GTTTTGATTT GGAGACGTGA TATTCATTTG TAGACCCAGA TGGCCTTCAA
  S
  ATGAGGATTA GAACTCGGAT TGCCTTAGTC GACTAACCTC TCAGAAGATT TTGAGGCGAA
  ATGATCAAAT TTATTGTTCA TAGGTGGCAA CCTGGCGATA AAGACAAGTC CACGGGAAAA
  GCCTAACCTC AACCTCCAAG ATAGAATCTC CCGCCAGCGC TGAAAGTACC TGCGGGGGGA
  GGAAGGGGGG GGGAGAACGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61427223	NES16810949	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48662262					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427223	NES16810949	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78355217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	45 bp proximal
Gm17324	predicted gene, 17324	within coordinates
Mto1	mitochondrial tRNA translation optimization 1	155 bp upstream
Rr401544	regulatory region 401544	102 bp upstream
Tssr86287	transcription start site region 86287	257 bp upstream