rs48662293 SNP Detail

Summary

• ID
  rs48662293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16193230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAATCTTG ACAATGGGCT
  CTCAGACCCT ATGCTGAACG ACTCAATCCT TAAGAGGAAA AACTTTCATG GATTCTAATC
  ATTGGCTCAG GACCACACTA ACCTGTTGCT GTGGAGAAAA ATACCTGTCC AAAGCCCAGG
  CTCGAAACTG AGAACTCCTC TCCAGTCATG AGGATACAGA TCTTACTGCC AATCTGTGGG
  R
  ACCGGGCACA CAGATGTTCT AAAACCTCTT TACTTTCATG TTAAATGCCA GGCTAAGGAA
  TAGGATCCCT TGCCAAAGCC ATTTGAAAGG AATGCCATTG TTTTGTTTGG TGGAGCATAT
  GGGCTAGTGA AGTGTGTGCA GGGACTCCCA GCATTTTGTT TAAAAGTTTG CTGCAGCAGT
  ATAAACAATT AAGGCAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620141	NES15517402	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48662293					SNP	G	G	A	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620141	NES15517402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16193230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	848 bp distal
Inhba	inhibin beta-A	within coordinates
Tssr118436	transcription start site region 118436	1939 bp downstream
Tssr118437	transcription start site region 118437	1703 bp downstream
Tssr118438	transcription start site region 118438	1589 bp downstream
Tssr118439	transcription start site region 118439	1541 bp downstream
Tssr118440	transcription start site region 118440	1347 bp downstream
Tssr118441	transcription start site region 118441	1232 bp downstream
Tssr118442	transcription start site region 118442	1012 bp downstream
Tssr118443	transcription start site region 118443	528 bp downstream
Tssr118444	transcription start site region 118444	467 bp downstream
Tssr118445	transcription start site region 118445	1274 bp upstream