rs48662692 SNP Detail

Summary

• ID
  rs48662692
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92585593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTG TAATGTAAAG CAGAAGAGCC
  H
  GAAGCCAGCA GCCTCATGTG TGACA                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60909749	NES16210509	PERLEGEN	MM_PANEL2	f	SNP			C	A	C	C	C	C
ss133387014	ENSMUSSNP2996585	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs48662692					SNP	T	T	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60909749	NES16210509	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92585593 () rs orientation: forward

Symbol	Name	Function Class
D6Mit284	DNA segment, Chr 6, Massachusetts Institute of Technology 284	1162 bp distal
Prickle2	prickle planar cell polarity protein 2	within coordinates