rs48662988 SNP Detail

Summary

• ID
  rs48662988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84497355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGGTTTC TCTCAGGAAA GCATGCAGCA GTCGTTCCCC
  TAGCTACTGC TAGCAGGATT GCAGATACAA GCCCACCTGT GGAGCCATCC ATCCCTCCTG
  Y
  CCTCCCAGAT TGGCCACAGC CAGCCAAGAT CCAAGTCTGG GGTAAGTCCC AGCTAATGGC
  AGACTTGGTA GGATGGACTT GGAGATAACA TAAGCCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146132092	ENSMUSSNP1813534	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48662988					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84497355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9566	CpG island 9566	905 bp distal
Gm36279	predicted gene, 36279	within coordinates
Gm56881	predicted gene, 56881	513 bp downstream
Rr333589	regulatory region 333589	within coordinates
Rr333590	regulatory region 333590	846 bp proximal
Rr340271	regulatory region 340271	554 bp distal
Rr405496	regulatory region 405496	1753 bp downstream
Thada	thyroid adenoma associated	149 bp downstream
Tssr146046	transcription start site region 146046	1301 bp downstream
Tssr149672	transcription start site region 149672	1973 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	1980 bp upstream