rs48663400 SNP Detail

Summary

• ID
  rs48663400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:44053188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCTGCTCAG ACTTCACCCC AAGCTGAAGC CTCCAGAGGG ACAGCAGGGA
  Y
  GAGCCACACT CAACCCCCCC CCTGCACATC AGGTCTGAGA GCTAGGAGCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136391571	ENSMUSSNP7154719	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48663400					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44053188 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	1085 bp downstream
Mcam	melanoma cell adhesion molecule	mRNA-UTR
Rr383290	regulatory region 383290	538 bp downstream
Tssr84626	transcription start site region 84626	1282 bp downstream