rs48664497 SNP Detail

Summary

• ID
  rs48664497
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119012094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGGAAA CTGGAGATGA
  AGTCAGGGTT CGGTAGGAAG CCTTCTAAGG GGAGATGGCT GCTGGAGAGG AGCTGGCACC
  CCAGAAATGC AATGACCATA GAAATGACCC AAGGGTGTGT GTGTGAGTGT GTGACCCTGC
  CAGGACCCTG GGTGACAGAG TAGTAAGATG CTTTCTGCTG GGCAGGCTCT CCTGTCCTGA
  S
  TTCTGACATC TCTGTCAGTG GACACACAGT CCTGGGGCAC ACACAGTTGT TGCTCTTTTC
  TATTAGAGGT TTTCTAGCTG ATTCTCTAGG GCCCTGCTAT GGATCCCATC GTTGCTTTGG
  AAGCAGCTCC CCACCTCTCC AGGGCTCTAA CTATCCCTAA GGCAGAGAAG GTTGTGTGCC
  TCCTAATTTC GCAAGGTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60667033	NES16246331	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48664497					SNP	G	G	G	G	C	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60667033	NES16246331	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119012094 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	within coordinates
Cpgi21109	CpG island 21109	666 bp distal
Rr382714	regulatory region 382714	266 bp upstream
Rr670996	regulatory region 670996	1612 bp distal
Rr670997	regulatory region 670997	197 bp distal
Rr670998	regulatory region 670998	338 bp proximal
Rr670999	regulatory region 670999	720 bp proximal
Tssr79649	transcription start site region 79649	1753 bp downstream
Tssr79650	transcription start site region 79650	1737 bp downstream
Tssr79651	transcription start site region 79651	1722 bp downstream
Tssr79652	transcription start site region 79652	1691 bp downstream
Tssr79653	transcription start site region 79653	1617 bp downstream
Tssr79654	transcription start site region 79654	1588 bp downstream
Tssr79655	transcription start site region 79655	1552 bp downstream