rs48664958 SNP Detail

Summary

• ID
  rs48664958
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:33272832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAATTGGA GTCAGAGTTA
  AGTAGAGTCA TGTATTTAAT TATATAGTTA AACAACTTAA CATGTGAATG GTAGAAAGTG
  TTTTATTGGA AGTCTTTAAT CTACATATCT CCACTACAAT AAGGAAAAGG TGGGGAACTT
  AGTGTTGATC AAATTTCTGT ACACACAGGG CGTCACCTTC CGAACTTTCA CTCTCCTTCC
  K
  TTCTTTGAGA AAAATTACTG GCATCTCTGC TCATAGAATT GTTCTTGGAA TGCAGCAGAG
  AAATGCTGCC CTAAGGAATA ATAAGTCATT ATGTTCCTCT GTGCTTTTTT TCCATTTTCC
  AATTTTTCTG CAAGTGAGAT TATGTACAAT ATATACTGAC CTACATCCAT GCATATAGTA
  TTACCTATAT TTAAAATAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60310211	NES15804531	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48664958					SNP	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60310211	NES15804531	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:33272832 () rs orientation: forward

Symbol	Name	Function Class
D19Mit81	DNA segment, Chr 19, Massachusetts Institute of Technology 81	1665 bp proximal
Rnls	renalase, FAD-dependent amine oxidase	within coordinates
Rr546635	regulatory region 546635	1112 bp proximal