rs48665448 SNP Detail

Summary

• ID
  rs48665448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTGCCT CACAGGCCTG
  CTTGTAAATT TGACTGATTT AGTTTTTGTA GCCCAGGATG GCCTGGAATT AACTCATAGA
  GATCCATCTG CCTTTGCTTC TTGTGTGTCA TCGTGGCTCA CCTCACTGGA AATTCCTGCT
  GTCACAAATA GTGAGAAACC ACTTCTCTGG GCTTCATTTT CTTTACAGGC AAAAGGGAAC
  R
  GGTATGGGTG AACTTATTCC AGAGTTAGAG ACCTGTGTGT TTAAAGTATC CAGCACTAGT
  AAATAAAGCA TTGGTAGATT TCCTTATACA CCCATTTCTT TGGCTCTTTA TAAGGAAGGA
  GATACAGGAT CAGGTAAGTA ACACCTCAGA TTGGGATCAA CAGCACAACA ATACAATAGG
  AGTGTGAGGT CAGTTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431855	NES15936367	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	A	G	G	A		G	A	A
ss135571347	ENSMUSSNP931129	ENSEMBL	ENSEMBL_Sanger	f	SNP							G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48665448					SNP	A	G	G	G	G	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431855	NES15936367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	310 bp proximal
Gm66976	predicted gene, 66976	75 bp downstream
Rhoc	ras homolog family member C	800 bp upstream
Rr77009	regulatory region 77009	50 bp proximal
Tssr31056	transcription start site region 31056	338 bp upstream
Tssr31057	transcription start site region 31057	559 bp upstream
Tssr31058	transcription start site region 31058	608 bp upstream
Tssr31059	transcription start site region 31059	792 bp upstream