rs48665642 SNP Detail

Summary

• ID
  rs48665642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97144315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGGCGA AGAATTAAGG
  TGCTCAGCTT GACAAACGAC ACCGGGATCC AGTCGGCATC CAACAGTCCG ATTCTGTTAT
  AGCTCAGATC CAGTCTTTTA ATCAGTCTGA AAAGGTTCCC GGGCACCTTA GATAGGTTTT
  TGTTGGTGCA GCTGACAATG TCGGTGGCAC AGATGCAAGC AGTGGGGCAC ATTCCTGAGG
  Y
  GCTGGGGCTC ACCATCACTG CGATCACCAA CAGACACAGC AGCTCTCTGC AACCCGGTTT
  GACAGCTCTA GGCAGGGTGG GCAGTGTGTG GAACCTTAAC GACATTATGG TCGCCTCTGA
  GTCTCTTGCC AGTCGCTTCT CATCAGCTCA GTCTCCCACC AATCTGGTAA CAACATTTAA
  AACGGGAGAA AAGTACAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss63609799	NES17042114	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C		C	T	C		T
ss325076402	CHEV_15_97076865	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs48665642					SNP	C	C	T	C	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63609799	NES17042114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97144315 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	within coordinates
Cpgi7615	CpG island 7615	843 bp distal
Cpgi7616	CpG island 7616	within coordinates
Gm57814	predicted gene, 57814	659 bp downstream
Pced1b	PC-esterase domain containing 1B	673 bp upstream
Rr312356	regulatory region 312356	within coordinates
Tssr132851	transcription start site region 132851	748 bp downstream
Tssr132852	transcription start site region 132852	524 bp upstream
Tssr132853	transcription start site region 132853	577 bp upstream
Tssr132854	transcription start site region 132854	957 bp upstream
Tssr136109	transcription start site region 136109	808 bp downstream
Tssr136110	transcription start site region 136110	872 bp downstream