rs48667048 SNP Detail

Summary

• ID
  rs48667048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAATCA AAGAGCTAAC
  TCTGCCGCGA AGGCGTCTTT GCTGATCCCC TCTGCCTCTC TGACGCTCTT CCGCACTTCC
  GGGGAACTTC ATCTAAATCT CTAAGGGCCT TTCTAAGAAT GGATGATGAC ACCGCGGGCC
  CCTCAGCCAT AGCTGCTGCT AAGTTCGTAG AGCTGAGAGG GGTTTTCTGA GGCAGAGTCA
  R
  GGGGTCACTG GGATGAAGAA AATTATTAGA GAATTAGGTT ATGGCAATGG TCACGGCTAG
  GTATGGCGTG GGAAGCCCGC AATCCCGGCC TTTGTAACAA GACCCTGTCT CAAACAAGGC
  AAAACAAAAA TGTGCAAAAC TGTGAATATT CTAGAAACTA CTGATTGTGC ACTTTAGAAG
  TTCTTTTTCA AGCTTTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144691616	ENSMUSSNP4380906	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321718372	CHEV_5_149366667	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48667048					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491901 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	1230 bp upstream
Cpgi17076	CpG island 17076	1944 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	1166 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	1297 bp upstream
Rr625195	regulatory region 625195	1812 bp distal
Rr625197	regulatory region 625197	1240 bp distal
Rr625198	regulatory region 625198	936 bp distal
Rr625199	regulatory region 625199	within coordinates
Rr625200	regulatory region 625200	1443 bp proximal
Tssr54578	transcription start site region 54578	1210 bp upstream
Tssr54579	transcription start site region 54579	1066 bp upstream